Same issue. All my werewolf skills are at morph 1. My evasion (medium armor active) seems stuck--says Level 1 but open says level IV but not progressing. Also did the skill resets this AM before this issue.
You need to reload UI each time significant xp is gain in order for the values to match in both the combat bar and the skill tree. This is the only method I know of atm. Tested with scroll and with enlightenment on a dolmen run.