There was a bug with the most recent update - at least on console - that certain user settings aren't being saved between sessions. Not sure if it also applies to PC but it would be easy to check - if any of your quest or map filters aren't being preserved, that's likely what it is.

The other possibility on PC is always security software blocking writes to the relevant folder, which for some AV software can kick in after a game update even if you'd previously excluded the relevant folder from security checks. So that's also worth checking (could be Windows security essentials aka Defender, MalwareBytes, Norton AV, etc.)